A stochastic model of hippocampal synaptic plasticity with geometrical readout of enzyme dynamics.

Discovering the rules of synaptic plasticity is an important step for understanding brain learning. Existing plasticity models are either (1) top-down and interpretable, but not flexible enough to account for experimental data, or (2) bottom-up and biologically realistic, but too intricate to interpret and hard to fit to data. To avoid the shortcomings of these approaches, we present a new plasticity rule based on a geometrical readout mechanism that flexibly maps synaptic enzyme dynamics to predict plasticity outcomes. We apply this readout to a multi-timescale model of hippocampal synaptic plasticity induction that includes electrical dynamics, calcium, CaMKII and calcineurin, and accurate representation of intrinsic noise sources. Using a single set of model parameters, we demonstrate the robustness of this plasticity rule by reproducing nine published ex vivo experiments covering various spike-timing and frequency-dependent plasticity induction protocols, animal ages, and experimental conditions. Our model also predicts that in vivo-like spike timing irregularity strongly shapes plasticity outcome. This geometrical readout modelling approach can be readily applied to other excitatory or inhibitory synapses to discover their synaptic plasticity rules.

Dual contribution of ASIC1a channels in the spinal processing of pain information by deep projection neurons revealed by computational modeling.

Dorsal horn of the spinal cord is an important crossroad of pain neuraxis, especially for the neuronal plasticity mechanisms that can lead to chronic pain states. Windup is a well-known spinal pain facilitation process initially described several decades ago, but its exact mechanism is still not fully understood. Here, we combine both ex vivo and in vivo electrophysiological recordings of rat spinal neurons with computational modeling to demonstrate a role for ASIC1a-containing channels in the windup process. Spinal application of the ASIC1a inhibitory venom peptides mambalgin-1 and psalmotoxin-1 (PcTx1) significantly reduces the ability of deep wide dynamic range (WDR) neurons to develop windup in vivo. All deep WDR-like neurons recorded from spinal slices exhibit an ASIC current with biophysical and pharmacological characteristics consistent with functional expression of ASIC1a homomeric channels. A computational model of WDR neuron supplemented with different ASIC1a channel parameters accurately reproduces the experimental data, further supporting a positive contribution of these channels to windup. It also predicts a calcium-dependent windup decrease for elevated ASIC conductances, a phenomenon that was experimentally validated using the Texas coral snake ASIC-activating toxin (MitTx) and calcium-activated potassium channel inhibitory peptides (apamin and iberiotoxin). This study supports a dual contribution to windup of calcium permeable ASIC1a channels in deep laminae projecting neurons, promoting it upon moderate channel activity, but ultimately leading to calcium-dependent windup inhibition associated to potassium channels when activity increases.

A neural field model for color perception unifying assimilation and contrast.

We address the question of color-space interactions in the brain, by proposing a neural field model of color perception with spatial context for the visual area V1 of the cortex. Our framework reconciles two opposing perceptual phenomena, known as simultaneous contrast and chromatic assimilation. They have been previously shown to act synergistically, so that at some point in an image, the color seems perceptually more similar to that of adjacent neighbors, while being more dissimilar from that of remote ones. Thus, their combined effects are enhanced in the presence of a spatial pattern, and can be measured as larger shifts in color matching experiments. Our model supposes a hypercolumnar structure coding for colors in V1, and relies on the notion of color opponency introduced by Hering. The connectivity kernel of the neural field exploits the balance between attraction and repulsion in color and physical spaces, so as to reproduce the sign reversal in the influence of neighboring points. The color sensation at a point, defined from a steady state of the neural activities, is then extracted as a nonlinear percept conveyed by an assembly of neurons. It connects the cortical and perceptual levels, because we describe the search for a color match in asymmetric matching experiments as a mathematical projection on color sensations. We validate our color neural field alongside this color matching framework, by performing a multi-parameter regression to data produced by psychophysicists and ourselves. All the results show that we are able to explain the nonlinear behavior of shifts observed along one or two dimensions in color space, which cannot be done using a simple linear model.

Dendritic sodium spikes endow neurons with inverse firing rate response to correlated synaptic activity.

Many neurons possess dendrites enriched with sodium channels and are capable of generating action potentials. However, the role of dendritic sodium spikes remain unclear. Here, we study computational models of neurons to investigate the functional effects of dendritic spikes. In agreement with previous studies, we found that point neurons or neurons with passive dendrites increase their somatic firing rate in response to the correlation of synaptic bombardment for a wide range of input conditions, i.e. input firing rates, synaptic conductances, or refractory periods. However, neurons with active dendrites show the opposite behavior: for a wide range of conditions the firing rate decreases as a function of correlation. We found this property in three types of models of dendritic excitability: a Hodgkin-Huxley model of dendritic spikes, a model with integrate and fire dendrites, and a discrete-state dendritic model. We conclude that fast dendritic spikes confer much broader computational properties to neurons, sometimes opposite to that of point neurons.

Hopf bifurcation in a nonlocal nonlinear transport equation stemming from stochastic neural dynamics.

In this work, we provide three different numerical evidences for the occurrence of a Hopf bifurcation in a recently derived [De Masi et al., J. Stat. Phys. 158, 866-902 (2015) and Fournier and löcherbach, Ann. Inst. H. Poincaré Probab. Stat. 52, 1844-1876 (2016)] mean field limit of a stochastic network of excitatory spiking neurons. The mean field limit is a challenging nonlocal nonlinear transport equation with boundary conditions. The first evidence relies on the computation of the spectrum of the linearized equation. The second stems from the simulation of the full mean field. Finally, the last evidence comes from the simulation of the network for a large number of neurons. We provide a "recipe" to find such bifurcation which nicely complements the works in De Masi et al. [J. Stat. Phys. 158, 866-902 (2015)] and Fournier and löcherbach [Ann. Inst. H. Poincaré Probab. Stat. 52, 1844-1876 (2016)]. This suggests in return to revisit theoretically these mean field equations from a dynamical point of view. Finally, this work shows how the noise level impacts the transition from asynchronous activity to partial synchronization in excitatory globally pulse-coupled networks.

Periodic Forcing of Inhibition-Stabilized Networks: Nonlinear Resonances and Phase-Amplitude Coupling.

Inhibition-stabilized networks (ISNs) are neural architectures with strong positive feedback among pyramidal neurons balanced by strong negative feedback from inhibitory interneurons, a circuit element found in the hippocampus and the primary visual cortex. In their working regime, ISNs produce damped oscillations in the [Formula: see text]-range in response to inputs to the inhibitory population. In order to understand the properties of interconnected ISNs, we investigated periodic forcing of ISNs. We show that ISNs can be excited over a range of frequencies and derive properties of the resonance peaks. In particular, we studied the phase-locked solutions, the torus solutions, and the resonance peaks. Periodically forced ISNs respond with (possibly multistable) phase-locked activity, whereas networks with sustained intrinsic oscillations respond more dynamically to periodic inputs with tori. Hence, the dynamics are surprisingly rich, and phase effects alone do not adequately describe the network response. This strengthens the importance of phase-amplitude coupling as opposed to phase-phase coupling in providing multiple frequencies for multiplexing and routing information.

On the Effects on Cortical Spontaneous Activity of the Symmetries of the Network of Pinwheels in Visual Area V1.

This paper challenges and extends earlier seminal work. We consider the problem of describing mathematically the spontaneous activity of V1 by combining several important experimental observations including (1) the organization of the visual cortex into a spatially periodic network of hypercolumns structured around pinwheels, (2) the difference between short-range and long-range intracortical connections, the first ones being rather isotropic and producing naturally doubly periodic patterns by Turing mechanisms, the second one being patchy, and (3) the fact that the Turing patterns spontaneously produced by the short-range connections and the network of pinwheels have similar periods. By analyzing the PO maps, we are able to classify all possible singular points (the pinwheels) as having symmetries described by a small subset of the wallpaper groups. We then propose a description of the spontaneous activity of V1 using a classical voltage-based neural field model that features isotropic short-range connectivities modulated by non-isotropic long-range connectivities. A key observation is that, with only short-range connections and because the problem has full translational invariance in this case, a spontaneous doubly periodic pattern generates a 2-torus in a suitable functional space which persists as a flow-invariant manifold under small perturbations, for example when turning on the long-range connections. Through a complete analysis of the symmetries of the resulting neural field equation and motivated by a numerical investigation of the bifurcations of their solutions, we conclude that the branches of solutions which are stable over an extended range of parameters are those that correspond to patterns with an hexagonal (or nearly hexagonal) symmetry. The question of which patterns persist when turning on the long-range connections is answered by (1) analyzing the remaining symmetries on the perturbed torus and (2) combining this information with the Poincaré-Hopf theorem. We have developed a numerical implementation of the theory that has allowed us to produce the predicted patterns of activities, the planforms. In particular we generalize the contoured and non-contoured planforms predicted by previous authors.

Short-term synaptic plasticity in the deterministic Tsodyks-Markram model leads to unpredictable network dynamics.

Short-term synaptic plasticity strongly affects the neural dynamics of cortical networks. The Tsodyks and Markram (TM) model for short-term synaptic plasticity accurately accounts for a wide range of physiological responses at different types of cortical synapses. Here, we report a route to chaotic behavior via a Shilnikov homoclinic bifurcation that dynamically organizes some of the responses in the TM model. In particular, the presence of such a homoclinic bifurcation strongly affects the shape of the trajectories in the phase space and induces highly irregular transient dynamics; indeed, in the vicinity of the Shilnikov homoclinic bifurcation, the number of population spikes and their precise timing are unpredictable and highly sensitive to the initial conditions. Such an irregular deterministic dynamics has its counterpart in stochastic/network versions of the TM model: The existence of the Shilnikov homoclinic bifurcation generates complex and irregular spiking patterns and--acting as a sort of springboard--facilitates transitions between the down-state and unstable periodic orbits. The interplay between the (deterministic) homoclinic bifurcation and stochastic effects may give rise to some of the complex dynamics observed in neural systems.

Bifurcation analysis applied to a model of motion integration with a multistable stimulus.

A computational study into the motion perception dynamics of a multistable psychophysics stimulus is presented. A diagonally drifting grating viewed through a square aperture is perceived as moving in the actual grating direction or in line with the aperture edges (horizontally or vertically). The different percepts are the product of interplay between ambiguous contour cues and specific terminator cues. We present a dynamical model of motion integration that performs direction selection for such a stimulus and link the different percepts to coexisting steady states of the underlying equations. We apply the powerful tools of bifurcation analysis and numerical continuation to study changes to the model's solution structure under the variation of parameters. Indeed, we apply these tools in a systematic way, taking into account biological and mathematical constraints, in order to fix model parameters. A region of parameter space is identified for which the model reproduces the qualitative behaviour observed in experiments. The temporal dynamics of motion integration are studied within this region; specifically, the effect of varying the stimulus gain is studied, which allows for qualitative predictions to be made.

Stability of the stationary solutions of neural field equations with propagation delays.

In this paper, we consider neural field equations with space-dependent delays. Neural fields are continuous assemblies of mesoscopic models arising when modeling macroscopic parts of the brain. They are modeled by nonlinear integro-differential equations. We rigorously prove, for the first time to our knowledge, sufficient conditions for the stability of their stationary solutions. We use two methods 1) the computation of the eigenvalues of the linear operator defined by the linearized equations and 2) the formulation of the problem as a fixed point problem. The first method involves tools of functional analysis and yields a new estimate of the semigroup of the previous linear operator using the eigenvalues of its infinitesimal generator. It yields a sufficient condition for stability which is independent of the characteristics of the delays. The second method allows us to find new sufficient conditions for the stability of stationary solutions which depend upon the values of the delays. These conditions are very easy to evaluate numerically. We illustrate the conservativeness of the bounds with a comparison with numerical simulation.

Persistent neural states: stationary localized activity patterns in nonlinear continuous n-population, q-dimensional neural networks.

Neural continuum networks are an important aspect of the modeling of macroscopic parts of the cortex. Two classes of such networks are considered: voltage and activity based. In both cases, our networks contain an arbitrary number, n, of interacting neuron populations. Spatial nonsymmetric connectivity functions represent cortico-cortical, local connections, and external inputs represent nonlocal connections. Sigmoidal nonlinearities model the relationship between (average) membrane potential and activity. Departing from most of the previous work in this area, we do not assume the nonlinearity to be singular, that is, represented by the discontinuous Heaviside function. Another important difference from previous work is that we relax the assumption that the domain of definition where we study these networks is infinite, that is, equal to R or R2. We explicitly consider the biologically more relevant case of a bounded subset omega of Rq, q = 1, 2, 3, a better model of a piece of cortex. The time behavior of these networks is described by systems of integro-differential equations. Using methods of functional analysis, we study the existence and uniqueness of a stationary (i.e., time-independent) solution of these equations in the case of a stationary input. These solutions can be seen as 'persistent'; they are also sometimes called bumps. We show that under very mild assumptions on the connectivity functions and because we do not use the Heaviside function for the nonlinearities, such solutions always exist. We also give sufficient conditions on the connectivity functions for the solution to be absolutely stable, that is, independent of the initial state of the network. We then study the sensitivity of the solutions to variations of such parameters as the connectivity functions, the sigmoids, the external inputs, and, last but not least, the shape of the domain of existence omega of the neural continuum networks. These theoretical results are illustrated and corroborated by a large number of numerical experiments in most of the cases 2 < or = n < or = 3, 2 < or = q < or = 3.